Dataset details
| Technique | LCM-seq |
|---|---|
| Title | Spatial reconstruction of single enterocytes uncovers broad zonation along the intestinal villus axis |
| PMID | 30270040 |
| Description | This study established a comprehensive panel of landmark genes, characterized by RNA-seq of laser capture microdissected epithelial samples originating from differential villus zones. They used these to reconstruct the spatial tissue coordinates of enterocytes in scRNA-seq data and uncovered vast heterogeneity and spatial sub-specialization. |
| Source | proximal Jejunum sections from three 8 week-old male C57BL/6 mice |
| Species | mouse |
| No. genes | 20882 genes |
| No. cells | NA |
| Resolution | cellular |
| Data normalization | TPM |
| Data availability | GSE109413, the corresponding raw and intermediary input files have been deposited in Zenodo (https://zenodo.org/record/1320734.). |