Dataset details
| Technique | Spatial transcriptomics |
|---|---|
| Title | Spatial detection of fetal marker genes expressed at low level in adult human heart tissue |
| PMID | 29021611 |
| Description | This study employed the spatial transcriptomics (ST) technology, which enables spatial analysis of fetal marker genes expressed at low levels within whole adult ventricle and atrial tissue sections. |
| Source | The adult human cardiac biopsies were from patients had angina pectoris with or without a previous myocardial infarction and were undergoing elective coronary artery bypass surgery. |
| Species | human |
| No. genes | 17934 genes |
| No. cells | NA |
| Resolution | 100 um |
| Data normalization | Median ratio normalization |
| Data availability | Gene counts and scripts can be downloaded from www.spatialtranscriptomicsresearch.org. |
Spatially variable (SV) genes
SV genes identified by SpatialDE (Q-value<0.05)
| ID | Gene | Species | Sample | Tissue | Array | P-value | Q-value |
|---|---|---|---|---|---|---|---|
| ID | Gene | Species | Sample | Tissue | Array | P-value | Q-value |
SV genes identified by trendsceek (Q-value<0.05)
| ID | Gene | Species | Sample | Tissue | Array | Q-value(Emark) | Q-value(Vmark) | Q-value(MarkCorr) | Q-value(MarkVario) |
|---|---|---|---|---|---|---|---|---|---|
| ID | Gene | Species | Sample | Tissue | Array | Q-value(Emark) | Q-value(Vmark) | Q-value(MarkCorr) | Q-value(MarkVario) |
Functional enrichment analysis of SV genes
GO enrichment analysis of SV genes identified by SpatialDE (Q-value<0.05) in right atrial appendage.
KEGG enrichment analysis of SV genes identified by SpatialDE (Q-value<0.05) in right atrial appendage.
GO enrichment analysis of SV genes identified by trendsceek (Q-value<0.05) in right atrial appendage.
KEGG enrichment analysis of SV genes identified by trendsceek (Q-value<0.05) in right atrial appendage.
