Dataset details
| Technique | Spatial transcriptomics |
|---|---|
| Title | Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity |
| PMID | 29925878 |
| Description | The study design involves twelve spatially separated biopsies taken from a cancerous prostate after radical prostatectomy. Overall, 5, 910 tissue regions within the 12 sections were analyzed. |
| Source | twelve spatially separated biopsies taken from a cancerous prostate after radical prostatectomy (Gs 3+4, pT3b, PSA=7.1) |
| Species | human |
| No. genes | 23484 genes |
| No. cells | NA |
| Resolution | 100 um |
| Data normalization | Median ratio normalization |
| Data availability | Count matrixes are available at www.spatialtranscriptomicsresearch.org. Sequencing data are deposited at the European Genome–Phenome Archive (EGA), hosted by the European Bioinformatics Institute (EBI), under the accession number EGAS0000100300. |